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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7409121_7409769_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7409121 - 7409769
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTGT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
ACTTCTTCACTT
Flanking Amino Acid:
EHVGSSKVLAALQSLYSVIA
Intron Amino Acid Position:
1736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
70.4
42.5
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
87.7
0.85
0.6
81.2
30.8
Minor 5ss
44
-0.7
3.3
65
46.2
Minor BPS
51.7
0.13
1.8
69.9
42

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161