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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7409846_7410677_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7409846 - 7410677
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACATT
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TGTTGTTTCACT
Flanking Amino Acid:
WILVLDKEDASNQPCYPWLE
Intron Amino Acid Position:
1761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
76.8
38.2
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
75
0.56
1
79
33.3
Minor 5ss
52.7
0.09
2.6
74.6
41.7
Minor BPS
56.3
0.28
2.2
80.14
42.2

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161