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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7412755_7414485_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7412755 - 7414485
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTACATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTCTTTACAT
Flanking Amino Acid:
AKEEQLIGKEESPLINLLGQ
Intron Amino Acid Position:
1917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.7
0.71
0.8
78.4
34.9
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
59.3
0.37
1.7
75.25
41.7

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161