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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7414696_7414832_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7414696 - 7414832
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTGGTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTCTAATT
Flanking Amino Acid:
GTASDSHIHLDATLKCQAYI
Intron Amino Acid Position:
1987

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
72.4
32.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78
0.63
1
73.3
40.9
Minor 5ss
43.1
-0.8
2.8
56.6
41.9
Minor BPS
69.2
0.68
1.6
87.82
31.2

Associated Gene:

Gene:
EPG5
Ensembl Gene ID:
ENSAPLG00000011964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012477
7375605 - 7421765
46161