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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7430405_7432126_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7430405 - 7432126
Intron Length:
1722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CAGCTTTTATCT
Flanking Amino Acid:
LLCLLSIFRKGVQSNGWSIH
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
33.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
37
-1.5
2.9
42.4
44.3
Minor BPS
49.2
0.02
1.6
61.52
42.8

Associated Gene:

Gene:
SIGLEC15
Ensembl Gene ID:
ENSAPLG00000024300
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018399
7425459 - 7432178
6720