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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7453699_7454632_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7453699 - 7454632
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGAATTG
5'SS Class:
major
3'SS Sequence:
CCCATTCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TCCCCATTCACA
Flanking Amino Acid:
ITWTEAEMSMLLQSIPVGVG
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.1
58.5
41.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
66.5
0.37
0.9
60.3
34.3
Minor 5ss
39.7
-1.2
3.5
52
47.1
Minor BPS
48.8
-0.1
2.1
61.69
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037958
7450747 - 7456139
5393