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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_74645458_74718173_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74645458 - 74718173
Intron Length:
72716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTTCCTTTAACC
Flanking Amino Acid:
ALCGSLALARGDLCDSNPCR
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
68.8
43.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.3
0.52
0.9
66
34.6
Minor 5ss
34.1
-1.8
3.2
47.7
47.8
Minor BPS
77
0.83
1.2
79.59
35.6

Associated Gene:

Gene:
EDIL3
Ensembl Gene ID:
ENSAPLG00000016364
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046935
74644519 - 74913610
269092
ENSAPLT00000019853
74644519 - 74904537
260019
ENSAPLT00000017081
74644519 - 74913491
268973