About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7477381_7478286_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7477381 - 7478286
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
AGGTTTCAAAGT
Flanking Amino Acid:
GAAFTNALSVLGLPLCTWPF
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
74.9
0.56
0.8
65.7
35.9
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
40.7
-0.6
2
54.6
41.6

Associated Gene:

Gene:
SLC14A2
Ensembl Gene ID:
ENSAPLG00000012208
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012750
7476771 - 7488342
11572