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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7478337_7478881_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7478337 - 7478881
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTCCTCATCT
Flanking Amino Acid:
WQTHLLALACALFCAYSGAA
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
65.2
0.55
1.9
84.24
42.6

Associated Gene:

Gene:
SLC14A2
Ensembl Gene ID:
ENSAPLG00000012208
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012750
7476771 - 7488342
11572