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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7479017_7480581_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7479017 - 7480581
Intron Length:
1565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGACCTCAACA
Flanking Amino Acid:
AIGSAVGMFAALSIATPFDS
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
100
1.24
0.5
100
0
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
61.4
0.36
1.7
68.45
43.7

Associated Gene:

Gene:
SLC14A2
Ensembl Gene ID:
ENSAPLG00000012208
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012750
7476771 - 7488342
11572