About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_74804853_74830333_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
74804853 - 74830333

Intron Length:
25481

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGA|GTAAGTATT

5'SS Class:
strong_major

3'SS Sequence:
TTTCCATTCATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AAATAAT

U12 Branch Point Sequence:
TTTCCATTCATA

Flanking Amino Acid:
GEFMGRNCQQRCSGPLGIEG

Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80.1
0.71
1
84.6
33.2

Major BPS
71.2
0.53
1
70.3
31.9

Major PPT
77.9
0.63
0.8
73.1
30.6

Minor 5ss
42.9
-0.8
2.9
57
41.2

Minor BPS
55.3
0.16
2
74.1
37.5

Associated Gene:

Gene:
EDIL3

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

74644519 - 74913610
269092

74644519 - 74904537
260019

74644519 - 74913491
268973