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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75005291_75036283_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

75005291 - 75036283

Intron Length:

30993

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCACC

5'SS Class:

strong_major

3'SS Sequence:

GCTGCCCTTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAC

U12 Branch Point Sequence:

CTGCCCTTACAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

74.9

35.3

Major BPS

73.5

0.58

0.9

75.4

28.3

Major PPT

73.4

0.53

0.9

64.9

36.5

Minor 5ss

35.2

-1.7

2.8

43.7

Minor BPS

-0.2

1.9

53.84

46.7

Associated Gene:

Gene:

HAPLN1

Ensembl Gene ID:

ENSAPLG00000016285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025355

75004898 - 75063923

59026