About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75036410_75045746_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75036410 - 75045746
Intron Length:
9337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGAATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTGCTTGAATC
Flanking Amino Acid:
LEHERIIHIQEENGPRLLVV
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
61.6
0.26
1
51.7
41.8
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
58.9
0.26
1.5
66.43
40.1

Associated Gene:

Gene:
HAPLN1
Ensembl Gene ID:
ENSAPLG00000016285
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025355
75004898 - 75063923
59026