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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75041722_75045746_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75041722 - 75045746
Intron Length:
4025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAGA
5'SS Class:
major
3'SS Sequence:
GCTTGAATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTGCTTGAATC
Flanking Amino Acid:
TQERFLPIRKEENGPRLLVV
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.6
43.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
61.6
0.26
1
51.7
41.8
Minor 5ss
30.6
-2.2
3.3
40.6
45.1
Minor BPS
58.9
0.26
1.5
66.43
40.1

Associated Gene:

Gene:
HAPLN1
Ensembl Gene ID:
ENSAPLG00000016285
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016999
75041676 - 75063318
21643