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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75056360_75063028_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

75056360 - 75063028

Intron Length:

6669

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCCTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTGAT

U12 Branch Point Sequence:

GACTGATTACTC

Flanking Amino Acid:

DVFCFTSNFNGRFYYLIHPT

Intron Amino Acid Position:

242

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.8

0.9

74.3

34.1

Major BPS

65.8

0.39

1.2

57.3

41.7

Major PPT

75.2

0.57

0.9

70.3

36.4

Minor 5ss

33.2

-1.9

3.4

45.7

43.4

Minor BPS

42.2

-0.6

2.1

49.03

41.3

Associated Gene:

Gene:

HAPLN1

Ensembl Gene ID:

ENSAPLG00000016285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016999

75041676 - 75063318

21643

ENSAPLT00000025355

75004898 - 75063923

59026