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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75111544_75112038_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75111544 - 75112038
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CTTTTCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCCTTTTCATT
Flanking Amino Acid:
WDMPKITCMNPSTYQRTYSK
Intron Amino Acid Position:
3504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
74.1
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
86.8
0.83
0.7
81.6
28.7
Minor 5ss
44.4
-0.6
2.8
60.4
38.3
Minor BPS
48.4
-0
1.7
63.63
42

Associated Gene:

Gene:
VCAN
Ensembl Gene ID:
ENSAPLG00000016034
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042610
75111403 - 75215393
103991
ENSAPLT00000036310
75111403 - 75215393
103991
ENSAPLT00000016757
75111403 - 75215399
103997