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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75128607_75129519_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
75128607 - 75129519
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGTACT
5'SS Class:
weak_major
3'SS Sequence:
CCTTTCCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AGTTAATAAAAA
Flanking Amino Acid:
LSHEEQIFVNRIGHDYQWIG
Intron Amino Acid Position:
3367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.3
68.4
42.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
71.7
0.49
0.8
71.3
28.5
Minor 5ss
46.3
-0.4
2.5
65.6
38.4
Minor BPS
44.7
-0.4
2.1
58.59
40

Associated Gene:

Gene:
VCAN
Ensembl Gene ID:
ENSAPLG00000016034
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036310
75111403 - 75215393
103991
ENSAPLT00000016757
75111403 - 75215399
103997
ENSAPLT00000042610
75111403 - 75215393
103991