Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75129679_75136889_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

75129679 - 75136889

Intron Length:

7211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTGT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTGTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

GTTTGTTTATTT

Flanking Amino Acid:

PSYIGALCEQDTETCDYGWH

Intron Amino Acid Position:

3314

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

79.5

36.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

80.7

0.69

0.9

37.8

Minor 5ss

38.5

-1.3

3.4

55.9

48.3

Minor BPS

54.6

0.22

76.04

41.4

Associated Gene:

Gene:

VCAN

Ensembl Gene ID:

ENSAPLG00000016034

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036310

75111403 - 75215393

103991

ENSAPLT00000016757

75111403 - 75215399

103997