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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75129679_75139269_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75129679 - 75139269
Intron Length:
9591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
PGFNGEQCELDTETCDYGWH
Intron Amino Acid Position:
3276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.7
0.69
0.9
76
37.8
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
VCAN
Ensembl Gene ID:
ENSAPLG00000016034
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042610
75111403 - 75215393
103991