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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75167956_75168465_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75167956 - 75168465
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CAATCTTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATAGAT
U12 Branch Point Sequence:
CTTGCAGTAACC
Flanking Amino Acid:
YSEAELPKEQADESTPFIKF
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
59
0.23
1.1
56.4
39.5
Major PPT
75.8
0.58
0.9
68.9
36.6
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
48.4
-0.1
2.3
67.13
44.6

Associated Gene:

Gene:
VCAN
Ensembl Gene ID:
ENSAPLG00000016034
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036310
75111403 - 75215393
103991