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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75181324_75195303_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75181324 - 75195303
Intron Length:
13980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTTGTTATTT
Flanking Amino Acid:
DVYCYVEHMKDEVVHVSVPE
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.8
0.78
0.7
78.2
30.7
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
50.3
0.09
2.3
74.56
43.3

Associated Gene:

Gene:
VCAN
Ensembl Gene ID:
ENSAPLG00000016034
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042610
75111403 - 75215393
103991
ENSAPLT00000036310
75111403 - 75215393
103991
ENSAPLT00000016757
75111403 - 75215399
103997