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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75195432_75195545_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75195432 - 75195545
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTGCTGTAATA
Flanking Amino Acid:
DAGWLSDQTVRYPIRHPRIG
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
80
0.75
1
78.6
31
Major PPT
74.5
0.55
0.9
70.1
40.1
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
50.7
0.02
2.1
66.01
41.8

Associated Gene:

Gene:
VCAN
Ensembl Gene ID:
ENSAPLG00000016034
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042610
75111403 - 75215393
103991
ENSAPLT00000036310
75111403 - 75215393
103991
ENSAPLT00000016757
75111403 - 75215399
103997