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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75206183_75215323_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75206183 - 75215323
Intron Length:
9141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCATCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
AATGCAATATCT
Flanking Amino Acid:
TLVITYMLPKVKAEKKTLVK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
73.9
0.54
0.8
65.4
35.9
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
44.8
-0.3
2.1
66.12
43.8

Associated Gene:

Gene:
VCAN
Ensembl Gene ID:
ENSAPLG00000016034
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042610
75111403 - 75215393
103991
ENSAPLT00000036310
75111403 - 75215393
103991
ENSAPLT00000016757
75111403 - 75215399
103997