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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75251104_75312807_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75251104 - 75312807
Intron Length:
61704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTAATATTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTTTGCTTAATA
Flanking Amino Acid:
TYETEMPAKEKPDPASEKTS
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.8
0.56
1
66.3
44
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
70.5
0.64
1.8
78.78
38.5

Associated Gene:

Gene:
XRCC4
Ensembl Gene ID:
ENSAPLG00000016008
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043638
75250615 - 75423843
173229