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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75308737_75312807_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75308737 - 75312807
Intron Length:
4071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ACTACTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTACTTTAAATC
Flanking Amino Acid:
TYETEMPAKEKELRVSSIYS
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.8
0.56
0.9
70.5
39.2
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
48.8
-0.1
1.6
56.57
36.1

Associated Gene:

Gene:
XRCC4
Ensembl Gene ID:
ENSAPLG00000016008
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016701
75308643 - 75415736
107094