About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75443415_75443567_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
75443415 - 75443567
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCTGCTAAC
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTCCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCTTCCATA
Flanking Amino Acid:
MSAIFNFQSLL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.4
56.9
44.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84
0.77
0.6
80.7
24.7
Minor 5ss
26.3
-2.7
3.7
33.9
35.7
Minor BPS
57
0.21
1.9
75.09
37.1

Associated Gene:

Gene:
TMEM167A
Ensembl Gene ID:
ENSAPLG00000015984
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016671
75443412 - 75452132
8721