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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75443678_75448961_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75443678 - 75448961
Intron Length:
5284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAGT
5'SS Class:
major
3'SS Sequence:
TTTATCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
APSLLDKNKTGLLGIFWKCA
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.4
41.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
89.8
0.89
0.7
84.9
29.8
Minor 5ss
43.1
-0.8
2.6
51.2
45.4
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
TMEM167A
Ensembl Gene ID:
ENSAPLG00000015984
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016671
75443412 - 75452132
8721