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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75614098_75625713_R

Intron Information:

Intron Rank:
135986
Intron Class:
major
Intron Phase:
Intron Coordinates:
75614098 - 75625713
Intron Length:
11616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATACCA
5'SS Class:
major
3'SS Sequence:
CCTTTTCAGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CCTTCTTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.2
36.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
71.7
0.49
1
68.7
36.4
Minor 5ss
26.9
-2.7
2.8
31.8
42
Minor BPS
63.5
0.28
1.4
61.34
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020594
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039976
75613878 - 75625815
11938