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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75705274_75733012_R

Intron Information:

Intron Rank:
152770
Intron Class:
major
Intron Phase:
Intron Coordinates:
75705274 - 75733012
Intron Length:
27739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGATATTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.4
0.59
0.9
70
40.9
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
60.5
0.33
1.8
76.96
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029754
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039522
75705147 - 75733492
28346