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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75719173_75720019_F

Intron Information:

Intron Rank:
143823
Intron Class:
major
Intron Phase:
Intron Coordinates:
75719173 - 75720019
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AATTCCTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
80.7
0.69
0.8
72.9
36.8
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
77
0.92
1.4
88.61
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027506
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024658
75718944 - 75725954
7011
ENSAPLT00000017457
75718944 - 75727919
8976