About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75821231_75822738_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75821231 - 75822738
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTTTGTTTAACA
Flanking Amino Acid:
LWEVTFIDFQIQGFNIQEGH
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
78.9
0.65
0.8
73.5
31.4
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
69.3
0.6
1.8
78.6
38.6

Associated Gene:

Gene:
ATP6AP1L
Ensembl Gene ID:
ENSAPLG00000005367
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005543
75820928 - 75835911
14984