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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75828805_75829464_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75828805 - 75829464
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GGCTCATAAAAC
Flanking Amino Acid:
FSDQDTLQSTGRHYDGGVKP
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.5
0.75
0.8
77.7
29.8
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
45.9
-0.3
2
54.56
42.7

Associated Gene:

Gene:
ATP6AP1L
Ensembl Gene ID:
ENSAPLG00000005367
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005543
75820928 - 75835911
14984