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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75829506_75835741_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75829506 - 75835741
Intron Length:
6236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TTCTGTACAACA
Flanking Amino Acid:
GLSVSVVADGSSRVFSDQDT
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
46.3
-0.2
2.2
64.11
42.5

Associated Gene:

Gene:
ATP6AP1L
Ensembl Gene ID:
ENSAPLG00000005367
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005543
75820928 - 75835911
14984