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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75881730_75924800_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75881730 - 75924800
Intron Length:
43071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATATTATTATGT
Flanking Amino Acid:
IEQALFLNVEESLDDSQVAG
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.5
0.73
0.8
81.3
36.3
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
47.1
-0.1
2.1
67.98
42.7

Associated Gene:

Gene:
ATG10
Ensembl Gene ID:
ENSAPLG00000005440
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021340
75852507 - 75931905
79399
ENSAPLT00000005618
75852507 - 75931905
79399