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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7589295_7590065_F

Intron Information:

Intron Rank:
142484
Intron Class:
major
Intron Phase:
Intron Coordinates:
7589295 - 7590065
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCAATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTATTCTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
81.3
32.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
68.8
0.42
0.9
60.7
39.9
Minor 5ss
31.8
-2.1
3.6
48.2
47.9
Minor BPS
61.9
0.35
1.5
68.09
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026774
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034162
7589037 - 7590929
1893