About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75964488_75975128_R

Intron Information:

Intron Rank:
138046
Intron Class:
major
Intron Phase:
Intron Coordinates:
75964488 - 75975128
Intron Length:
10641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGCTACTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.2
0.68
0.8
77.9
36.6
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
60.9
0.42
1.8
77.82
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021796
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039368
75962179 - 75975343
13165