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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_75988626_75992956_R

Intron Information:

Intron Rank:
143026
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
75988626 - 75992956
Intron Length:
4331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
ATGACATATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGCCATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
58.5
0.19
1
48.9
43.7
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
67.9
0.64
1.6
81.61
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024299
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046764
75988204 - 75993137
4934