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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76001271_76038165_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76001271 - 76038165
Intron Length:
36895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTATACTAAATA
Flanking Amino Acid:
SVPSDGQAREKLALYVYEYL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
60.3
0.32
1.8
73.21
38.7

Associated Gene:

Gene:
SSBP2
Ensembl Gene ID:
ENSAPLG00000005451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005688
76001068 - 76174283
173216