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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76043314_76044951_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76043314 - 76044951
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTAATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AACTTCTTAATT
Flanking Amino Acid:
EPPGFLHSWWCVFWDLYCAA
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
81.4
30.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.4
0.75
0.8
77.4
35.5
Minor 5ss
37.4
-1.4
3.3
49.4
41.4
Minor BPS
73.8
0.82
1.1
78.94
37.5

Associated Gene:

Gene:
SSBP2
Ensembl Gene ID:
ENSAPLG00000005451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005688
76001068 - 76174283
173216