Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76137758_76140864_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

76137758 - 76140864

Intron Length:

3107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TCTATGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

GTCCTTGTAATA

Flanking Amino Acid:

PRPPLRIPNQALGGVPGSQP

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

84.4

0.85

1.1

34.5

Major PPT

76.7

0.6

0.9

69.7

36.6

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

46.7

-0.2

1.9

56.23

37.7

Associated Gene:

Gene:

SSBP2

Ensembl Gene ID:

ENSAPLG00000005451

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005688

76001068 - 76174283

173216