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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76140932_76141117_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76140932 - 76141117
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTTAAATT
Flanking Amino Acid:
PSGMDPTRQQGHPNMGGPMQ
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
81.7
25.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.3
0.84
0.8
82
34
Minor 5ss
29
-2.4
2.7
32.7
42.2
Minor BPS
63.7
0.51
1.6
79.54
37.3

Associated Gene:

Gene:
SSBP2
Ensembl Gene ID:
ENSAPLG00000005451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005688
76001068 - 76174283
173216