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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76141189_76145121_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76141189 - 76145121
Intron Length:
3933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTCT
5'SS Class:
major
3'SS Sequence:
GTTATCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GTAGTCTGACCC
Flanking Amino Acid:
PRGMVPLGPQNYGGAMRPPL
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.5
39.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.6
0.62
0.9
70.6
39.7
Minor 5ss
47.3
-0.3
2.8
68.6
42
Minor BPS
46.8
-0.2
1.8
56.34
41.9

Associated Gene:

Gene:
SSBP2
Ensembl Gene ID:
ENSAPLG00000005451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005688
76001068 - 76174283
173216