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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76158162_76161357_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76158162 - 76161357
Intron Length:
3196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGAAA
5'SS Class:
major
3'SS Sequence:
TCTCTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TAGCACTTAAAA
Flanking Amino Acid:
PGTPIMPSPADSTNSGDNMY
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.4
36.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.8
0.8
0.8
80.3
30.2
Minor 5ss
37.7
-1.4
3.1
48.2
47.6
Minor BPS
56.7
0.21
1.6
65
40.4

Associated Gene:

Gene:
SSBP2
Ensembl Gene ID:
ENSAPLG00000005451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005688
76001068 - 76174283
173216