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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76165800_76171345_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76165800 - 76171345
Intron Length:
5546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTATTTAACA
Flanking Amino Acid:
GSGDMDSISKNSPSNMSMSN
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.8
0.69
0.9
76.9
35.7
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
73.9
0.75
1.4
80.03
36.1

Associated Gene:

Gene:
SSBP2
Ensembl Gene ID:
ENSAPLG00000005451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005688
76001068 - 76174283
173216