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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76194136_76198366_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76194136 - 76198366
Intron Length:
4231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAC
5'SS Class:
major
3'SS Sequence:
CTCTTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CTCTTCTTAACA
Flanking Amino Acid:
MDDIQFEEAARVGQVITIKA
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
68.6
36.4
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
80.2
0.68
0.8
76.5
30.7
Minor 5ss
32.1
-2
3.2
42.9
44.3
Minor BPS
77.8
0.87
1.2
78.35
38.8

Associated Gene:

Gene:
ACOT12
Ensembl Gene ID:
ENSAPLG00000005659
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005887
76191379 - 76224643
33265