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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76198428_76199446_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76198428 - 76199446
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TCTCCCACTACC
Flanking Amino Acid:
VNRAFNTSMEVGIKVTVQDV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
50
0
1.2
61.8
35.9
Major PPT
85.3
0.79
0.6
81.3
23.7
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
46
-0.3
2.1
62.02
42.9

Associated Gene:

Gene:
ACOT12
Ensembl Gene ID:
ENSAPLG00000005659
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005887
76191379 - 76224643
33265