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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76199549_76201954_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
76199549 - 76201954
Intron Length:
2406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCATT
5'SS Class:
weak_major
3'SS Sequence:
CCCCTTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
CCCCTTTTCATA
Flanking Amino Acid:
YVAKPVGAKKIELEPVQLLS
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
76.3
38.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
75.1
0.56
0.7
70.7
27.3
Minor 5ss
55.2
0.18
2.5
75.2
40.7
Minor BPS
44.8
-0.4
1.6
46.66
38.4

Associated Gene:

Gene:
ACOT12
Ensembl Gene ID:
ENSAPLG00000005659
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005887
76191379 - 76224643
33265