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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76202088_76204323_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76202088 - 76204323
Intron Length:
2236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTATAT
Flanking Amino Acid:
QNLMQESNKEDTFKEEDAVS
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82.4
29.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.5
0.69
0.9
77.5
35.1
Minor 5ss
33
-1.9
2.7
43.8
43.3
Minor BPS
53.4
0.18
2
74.75
41.1

Associated Gene:

Gene:
ACOT12
Ensembl Gene ID:
ENSAPLG00000005659
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005887
76191379 - 76224643
33265