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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76209043_76210425_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76209043 - 76210425
Intron Length:
1383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAACTC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTAATCTGAACT
Flanking Amino Acid:
NAIVNNTFQNSVEVGVRVEA
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.8
0.69
0.8
77.8
34.5
Minor 5ss
35.9
-1.6
3.3
50.8
45.8
Minor BPS
67.9
0.64
1.4
82.64
37.9

Associated Gene:

Gene:
ACOT12
Ensembl Gene ID:
ENSAPLG00000005659
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005887
76191379 - 76224643
33265