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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76214431_76220839_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76214431 - 76220839
Intron Length:
6409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATA
Flanking Amino Acid:
GWEITSMLEHIKIWTHEEGD
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.4
0.77
0.8
76.5
37.4
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
75.5
0.8
1.1
78.11
33

Associated Gene:

Gene:
ACOT12
Ensembl Gene ID:
ENSAPLG00000005659
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005887
76191379 - 76224643
33265